Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004938.1 Corchorus capsularis cultivar CVL-1 contig04956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18284
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:2289 original size:5 final size:5

Alignment explanation


    Indices: 2276--2326  Score: 75
    Period size: 5  Copynumber: 10.2  Consensus size: 5

       2266 ATCGTCGTTG

                *           *           *                              
       2276 GGTCG GGTCT GGTCG GGTCT GGTCG GGTCT GGTCT GGTCT GGTCT GGTCT
          1 GGTCT GGTCT GGTCT GGTCT GGTCT GGTCT GGTCT GGTCT GGTCT GGTCT

             
       2326 G
          1 G

       2327 TTGTGGTTCG


Statistics
Matches: 41,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   5   41  1.00

ACGTcount: A:0.00, C:0.20, G:0.47, T:0.33


Consensus pattern (5 bp):   
GGTCT

Found at i:2291 original size:10 final size:10

Alignment explanation


    Indices: 2276--2326  Score: 84
    Period size: 10  Copynumber: 5.1  Consensus size: 10

       2266 ATCGTCGTTG

                      
       2276 GGTCGGGTCT
          1 GGTCGGGTCT

                      
       2286 GGTCGGGTCT
          1 GGTCGGGTCT

                      
       2296 GGTCGGGTCT
          1 GGTCGGGTCT

                *     
       2306 GGTCTGGTCT
          1 GGTCGGGTCT

                *     
       2316 GGTCTGGTCT
          1 GGTCGGGTCT

             
       2326 G
          1 G

       2327 TTGTGGTTCG


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  10   40  1.00

ACGTcount: A:0.00, C:0.20, G:0.47, T:0.33


Consensus pattern (10 bp):   
GGTCGGGTCT

Done.