Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004939.1 Corchorus capsularis cultivar CVL-1 contig04957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15921

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
549--613
33
2.0
33
87
6
96
43
16
21
18
1.88
2067--2230
67
2.6
63
92
5
260
29
8
21
40
1.83
2456--2510
26
2.1
26
82
0
65
30
23
9
36
1.86
3766--6009
336
6.7
331
73
11
1223
38
15
13
33
1.86
3637--6057
335
7.2
331
75
10
1585
37
15
13
32
1.87
7578--8016
225
2.0
224
85
2
594
40
14
12
32
1.84
9190--9229
20
2.1
19
85
4
53
0
17
2
80
0.83
10656--10751
27
3.5
25
68
25
68
44
34
11
9
1.73
10677--10787
33
3.4
31
68
27
77
46
31
12
9
1.73
10645--10734
30
3.1
30
68
26
84
44
33
10
12
1.75
11302--11330
2
14.5
2
100
0
58
48
0
0
51
1.00
11763--11855
27
3.4
27
74
0
105
22
4
21
51
1.65
11761--11865
54
1.9
54
96
0
192
22
4
20
52
1.65
13647--13686
2
19.5
2
84
5
53
47
0
7
45
1.31

Tables:   1

The End!