Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004940.1 Corchorus capsularis cultivar CVL-1 contig04958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7651

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--36
2
18.0
2
100
0
72
50
0
0
50
1.00
4125--4336
108
2.0
106
83
9
274
31
9
23
35
1.87
4293--4375
22
3.8
22
87
6
107
34
12
18
34
1.87
4207--4571
174
2.1
174
94
1
644
30
10
20
37
1.87
4467--4679
22
9.9
22
74
12
149
34
10
16
38
1.84
5248--5424
22
7.8
22
75
12
137
36
9
16
37
1.80
5202--5420
69
3.2
64
84
7
233
36
8
17
36
1.81
5250--5420
69
2.5
69
88
2
238
36
8
15
38
1.79
5246--5548
44
7.0
44
69
15
166
37
9
16
36
1.81
5384--5491
56
1.9
56
84
0
144
36
10
18
35
1.85
5508--5564
22
2.6
22
77
5
62
40
8
15
35
1.79
5443--5564
44
2.8
44
81
7
140
40
9
13
36
1.78
5651--5741
22
4.0
22
79
9
103
41
9
16
31
1.81
5651--6034
44
8.7
44
67
15
152
35
9
16
38
1.82
5778--5837
23
2.6
24
81
7
79
36
5
13
45
1.65
5821--5867
22
2.1
22
88
0
67
34
10
12
42
1.78
5873--6043
22
7.8
21
68
14
64
33
11
18
36
1.86
6023--6064
21
2.0
22
86
13
61
47
4
19
28
1.69
6481--6596
55
2.1
55
93
0
196
24
37
9
29
1.87

Tables:   1

The End!