Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004946.1 Corchorus capsularis cultivar CVL-1 contig04964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18522

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8116--8166
3
16.3
3
88
11
68
37
0
0
62
0.95
8116--8175
19
3.2
19
84
13
79
40
0
0
60
0.97
8117--8163
22
2.0
24
92
8
80
38
0
0
61
0.96
8188--8214
2
13.5
2
100
0
54
51
0
0
48
1.00
12321--12409
39
2.3
39
80
3
99
35
23
15
24
1.94
15445--15509
33
2.0
33
84
6
87
15
38
27
18
1.91
15801--15842
20
2.1
20
86
8
59
54
7
7
30
1.54
17352--17470
36
3.4
35
76
15
131
28
13
8
49
1.71
17373--17480
32
3.3
30
79
16
108
29
13
7
49
1.70
17352--17480
68
1.9
68
87
6
190
28
13
7
50
1.69
17487--17908
36
11.6
36
87
3
540
24
21
10
44
1.82
17902--18072
11
15.5
11
77
4
121
22
21
9
46
1.80
17954--18074
22
5.5
22
92
0
170
25
20
9
44
1.81
18216--18350
42
3.3
42
90
5
206
25
20
11
43
1.84
18250--18358
39
2.7
39
85
7
103
27
21
10
41
1.85
18483--18512
15
2.1
14
93
6
51
16
26
10
46
1.78

Tables:   1

The End!