Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004958.1 Corchorus capsularis cultivar CVL-1 contig04976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8985

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89--471
98
3.9
97
80
8
393
21
27
17
33
1.96
89--462
48
7.7
49
81
4
382
21
28
17
32
1.96
1080--1124
23
2.0
23
86
4
65
37
13
35
13
1.84
1422--1454
17
1.9
17
100
0
66
27
18
36
18
1.94
1782--2322
156
3.5
156
80
7
596
34
19
16
30
1.93
2049--2368
156
2.1
155
82
5
385
37
19
15
27
1.92
3258--3313
25
2.1
29
83
12
75
19
19
12
48
1.80
5236--5281
24
1.9
24
95
0
83
47
4
6
41
1.49
5902--5951
22
2.3
22
89
0
73
38
6
0
56
1.24
6883--7241
22
16.4
22
75
8
261
37
11
17
33
1.86
7005--7265
87
3.0
88
80
3
265
36
10
19
33
1.86
7736--7773
2
19.5
2
89
5
60
52
0
0
47
1.00

Tables:   1

The End!