Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004975.1 Corchorus capsularis cultivar CVL-1 contig04993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22538

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1735--1828
45
2.1
46
91
2
154
41
12
15
29
1.85
2129--2244
44
2.6
43
85
6
135
37
10
12
39
1.77
2129--2244
22
5.3
21
77
8
115
37
10
12
39
1.77
2382--2416
19
1.9
17
88
11
52
34
14
17
34
1.90
4429--4456
2
14.0
2
100
0
56
50
0
0
50
1.00
9413--9449
15
2.5
15
100
0
74
32
27
35
5
1.79
15843--15870
1
28.0
1
100
0
56
100
0
0
0
0.00
18649--18725
38
2.0
38
94
0
136
16
14
15
53
1.74
19192--19254
33
1.9
33
100
0
126
33
23
3
39
1.71
21021--21052
2
16.0
2
93
0
55
46
3
0
50
1.17

Tables:   1

The End!