Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004976.1 Corchorus capsularis cultivar CVL-1 contig04994, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12604

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
847--936
2
50.5
2
67
22
58
53
0
2
44
1.13
867--939
30
2.4
30
100
0
146
53
0
2
43
1.15
1193--1256
25
2.6
25
89
0
101
32
28
21
17
1.96
3337--3376
14
2.7
16
81
14
50
35
0
0
65
0.93
4855--4933
22
3.6
22
81
10
99
22
7
27
41
1.81
4851--4939
21
4.2
21
76
9
83
22
10
24
42
1.84
4892--5106
84
2.5
86
86
6
303
22
14
22
40
1.91
6879--6920
21
1.9
22
90
9
68
14
19
26
40
1.89
6964--7007
21
2.0
22
91
8
72
18
15
27
38
1.91
6969--7020
23
2.4
21
83
6
59
17
13
32
36
1.89
7051--7094
21
2.0
22
86
8
63
20
15
25
38
1.92
7100--7193
43
2.2
45
77
11
106
22
9
26
41
1.84
7125--7195
21
3.3
21
68
3
61
22
9
26
40
1.85
6825--7122
87
3.4
87
94
0
506
23
16
21
38
1.93
7599--7634
2
18.5
2
94
5
65
47
0
0
52
1.00
8998--9104
16
6.7
16
74
6
83
39
35
14
10
1.81
8992--9101
32
3.4
32
83
0
139
37
37
15
10
1.81
10972--11018
23
2.0
23
84
15
62
34
38
23
4
1.74
10988--11059
16
4.6
16
76
13
69
40
36
16
6
1.76
10972--11059
31
2.8
32
79
6
99
38
36
18
6
1.77

Tables:   1

The End!