Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000498.1 Corchorus capsularis cultivar CVL-1 contig00498, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 881

Length: 1469
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36


Found at i:208 original size:13 final size:13

Alignment explanation


    Indices: 190--224  Score: 70
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        180 ATAATTATTG

                         
        190 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

                         
        203 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

                     
        216 TTTGCTTTA
          1 TTTGCTTTA

        225 GATTTAGATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   22  1.00

ACGTcount: A:0.20, C:0.09, G:0.09, T:0.63


Consensus pattern (13 bp):   
TTTGCTTTATTAA

Found at i:232 original size:6 final size:6

Alignment explanation


    Indices: 221--247  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        211 ATTAATTTGC

                                           
        221 TTTAGA TTTAGA TTTAGA TTTAGA TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTT

        248 GCTTTGCTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56


Consensus pattern (6 bp):   
TTTAGA

Done.