Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004990.1 Corchorus capsularis cultivar CVL-1 contig05008, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4887
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39


Found at i:4632 original size:2 final size:2

Alignment explanation


    Indices: 4595--4648  Score: 62
    Period size: 2  Copynumber: 28.5  Consensus size: 2

       4585 TTCCAACTGT

                   *                                                       
       4595 TA TA TG TA TA GTA TA -A TA TA -A TA TA -A TA TA -A TA TA TA TA
          1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                                  
       4634 TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA T

       4649 GTGGGTGTGT


Statistics
Matches: 45,  Mismatches: 2, Indels: 10
        0.79            0.04        0.18

Matches are distributed among these distances:
   1    4  0.09
   2   39  0.87
   3    2  0.04

ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46


Consensus pattern (2 bp):   
TA

Done.