Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004999.1 Corchorus capsularis cultivar CVL-1 contig05017, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3621
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29


Found at i:2649 original size:15 final size:15

Alignment explanation


    Indices: 2631--2671  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2621 CCCATTTCCA

                    *      
       2631 CCTCCACCTCCACCC
          1 CCTCCACCACCACCC

                          *
       2646 CCTCCACCACCACCA
          1 CCTCCACCACCACCC

              *        
       2661 CCGCCACCACC
          1 CCTCCACCACC

       2672 TAAGCCGCCA


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.20, C:0.71, G:0.02, T:0.07


Consensus pattern (15 bp):   
CCTCCACCACCACCC

Found at i:3599 original size:2 final size:2

Alignment explanation


    Indices: 3587--3620  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       3577 TCATAGTTGC

                  *                                           
       3587 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       3621 A


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Done.