Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000500.1 Corchorus capsularis cultivar CVL-1 contig00500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1623
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:713 original size:21 final size:22

Alignment explanation


    Indices: 667--719  Score: 58
    Period size: 21  Copynumber: 2.5  Consensus size: 22

        657 GTGACTTGGC

                               *  
        667 ATGGCGCGGCATAGGCTCGTGG
          1 ATGGCGCGGCATAGGCTCGCGG

                                   
        689 -TGGCGCGGCAT-GG-TGCGCGG
          1 ATGGCGCGGCATAGGCT-CGCGG

                 *     
        709 ATGGCTCGGCA
          1 ATGGCGCGGCA

        720 AGGGCCGGGC


Statistics
Matches: 27,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  19    1  0.04
  20    6  0.22
  21   20  0.74

ACGTcount: A:0.11, C:0.25, G:0.47, T:0.17


Consensus pattern (22 bp):   
ATGGCGCGGCATAGGCTCGCGG
Done.