Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005000.1 Corchorus capsularis cultivar CVL-1 contig05018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15900
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:7443 original size:4 final size:4

Alignment explanation


    Indices: 7434--7459  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

       7424 AAAGCCATGC

                                            
       7434 AAAT AAAT AAAT AAAT AAAT AAAT AA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AA

       7460 CAACTAATGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23


Consensus pattern (4 bp):   
AAAT

Found at i:14442 original size:2 final size:2

Alignment explanation


    Indices: 14435--14471  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

      14425 CGATCTTATC

                                                                   
      14435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

      14472 AACTGTAGAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.