Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005011.1 Corchorus capsularis cultivar CVL-1 contig05029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4913
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Found at i:3394 original size:19 final size:19

Alignment explanation


    Indices: 3370--3408  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3360 ACTCAATTTG

                         *     
       3370 TCCTTTTATATTTGTCATT
          1 TCCTTTTATATTTATCATT

                               
       3389 TCCTTTTATATTTATCATT
          1 TCCTTTTATATTTATCATT

             
       3408 T
          1 T

       3409 TTTTCAACGT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.18, C:0.15, G:0.03, T:0.64


Consensus pattern (19 bp):   
TCCTTTTATATTTATCATT
Done.