Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005024.1 Corchorus capsularis cultivar CVL-1 contig05042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2473
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34


Found at i:2092 original size:6 final size:6

Alignment explanation


    Indices: 2077--2111  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       2067 TTTCTCCTTC

                 *                        *         
       2077 AAAAAA AAAAAG AAAAAG AAAAAG AAGAAG AAAAA
          1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA

       2112 TGGAAATTTA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (6 bp):   
AAAAAG

Done.