Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005030.1 Corchorus capsularis cultivar CVL-1 contig05048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11409

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
817--951
50
2.6
52
85
4
202
20
20
13
45
1.85
2137--2194
5
11.2
5
77
22
50
58
0
1
39
1.08
2131--2183
17
2.8
20
78
21
69
58
0
1
39
1.09
2132--2194
7
8.6
7
85
15
83
58
0
1
39
1.07
2131--2204
26
2.8
26
77
18
75
58
0
1
40
1.07
4248--4303
15
3.6
15
74
9
58
19
8
33
37
1.83
4234--4320
32
2.7
32
92
0
138
16
10
35
37
1.82
4458--4516
16
3.7
16
81
0
73
5
13
30
50
1.63
6434--6485
22
2.4
22
96
0
95
40
15
5
38
1.71
6776--7020
22
11.1
22
74
9
151
35
14
9
40
1.79
6789--6974
67
2.8
66
78
10
200
33
13
9
42
1.78
6787--7020
44
5.3
45
77
9
187
35
13
10
41
1.78
7147--7250
22
4.8
22
73
1
93
34
16
6
42
1.74
7236--7336
22
4.5
21
79
8
78
35
14
9
39
1.80
7274--7374
21
4.5
24
81
12
103
32
10
9
46
1.72
7397--7451
22
2.5
23
82
11
71
38
16
5
40
1.72
7415--7475
22
2.8
22
82
5
61
39
22
4
32
1.76
7572--7755
22
8.3
22
72
12
99
39
19
8
32
1.82
7579--7723
44
3.2
44
76
13
127
37
19
9
33
1.84
9582--9646
30
2.1
31
88
2
96
49
1
16
32
1.56
9675--9716
2
20.5
2
90
4
66
45
0
4
50
1.23
9859--9902
23
1.9
22
82
17
54
27
34
25
13
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9860--9912
16
3.3
15
75
19
54
28
33
26
11
1.91
11064--11131
16
4.3
16
78
16
79
36
38
19
5
1.76

Tables:   1

The End!