Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005032.1 Corchorus capsularis cultivar CVL-1 contig05050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2625

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--303
38
5.4
37
78
5
158
52
6
14
25
1.67
100--242
76
1.9
76
89
0
223
54
5
13
26
1.60
227--305
40
2.0
40
90
5
124
48
8
18
24
1.77
398--437
21
1.9
21
84
0
53
57
2
22
17
1.52
431--470
14
2.9
14
84
0
53
52
2
22
22
1.59
403--499
50
2.0
50
87
2
142
54
3
21
20
1.58
445--535
35
2.6
36
82
8
98
54
2
21
20
1.55
510--681
21
8.0
22
75
9
151
53
5
19
22
1.64
519--658
63
2.2
63
82
11
169
54
5
18
21
1.64
546--756
22
9.5
22
72
16
150
52
6
18
22
1.68
649--789
35
4.0
34
84
8
192
51
7
19
22
1.71
629--776
71
2.1
70
84
3
197
52
5
19
22
1.67
651--829
35
4.9
35
78
13
180
48
6
21
22
1.73
649--789
71
2.0
71
91
0
228
51
7
19
22
1.71
708--854
21
7.3
21
68
17
96
47
6
23
23
1.73
708--853
42
3.6
42
78
8
135
47
6
23
22
1.73
914--960
13
3.5
13
72
16
51
61
0
27
10
1.29

Tables:   1

The End!