Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01005046.1 Corchorus capsularis cultivar CVL-1 contig05064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5648
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Found at i:735 original size:330 final size:332
Alignment explanation
Indices: 2--5433 Score: 7679
Period size: 330 Copynumber: 16.4 Consensus size: 332
1 C
* * * * * * *
2 ATTCATCTTACGAAATCTCATCAACAATGGATTTAAGGGTACATTTTTACGAAGATTTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* *
67 GTTTCGATTTAATCAGAAATTAATTTTTAAAAAAATAGGAAAAACGGTATTTGAAGCGTGAAAAA
66 GTTTCGATTTAATCAGAAATTAA--TTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAA
* *
132 CCCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGAGCAAAGAATTGAGGAT
129 CCCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAA
* * * * * * *
197 AAAATTTTCCGGGTCATTTTTTGCGAAATTTTGACTGTAATCGTGTACTTACCATCACGATTTTT
194 AAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * * * * * *
262 TGCTAAAAACGCGTTCTGAGGCCCCGACTCAGTTTTTCATTATTATTTGTGCC-ATGACTCCTTT
259 TGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGA-GACTCCTTG
*
326 AAATTTCTAT
323 AAATTTCTGT
* * * * *
336 ATTCATCTTACCAAATCTCATCCATAATGGATTTAAGGATACATTTTTACGAAGATTTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* *
401 GTTTCGATTTAATCAGAAATTAATTTAAAAAAATAGGAAAAACGGTATTTGAAGCGTGAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
*
466 CTTCAATCTTTTTTGTATTGAATTATATA-TTCGTTATGAGTATTGGGGCAAACAATTGAGG-AA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGGAAA
* * * *
529 TAATTTTCTGGGTCATTTTTTGCGAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
195 AAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
*
594 GCCCAAAACGCGTTCC-GGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
260 GCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
658 ATTTCTGT
325 ATTTCTGT
**
666 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATATATTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
*
731 GTTTCGATTTAATCAGAAATTAATTTAGAAAACTTGGAAAAACGGTATTTGAAGCGTGAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
* * * *
796 CTTCAAACTTTTTGGTATTGAATTATATA-TTCGTTATGAGTATTGGGGTAAACAATTGAGGAAA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGGAAA
*
860 AAACATTT-CGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACAGTTTTT
195 AAA-ATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * *
924 TGCCAAAAAGGCGTTCCGGGGCCCAGGCTCAGTTTTGCATGA--TTTTGAGCAGAGACTCCTTGT
259 TGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGA
*
987 AATTTATGT
324 AATTTCTGT
* *
996 ATTCATCTTTCCAACTCTCATCCACAATGGATTTAAGGATATGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* * *
1061 GTTTCGATTTAATTAGAAATTAATTTAGAAGAATTGG-AAAACGGTATTTGAAGCGTAAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
*
1125 CGTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAAA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAAA
* *
1190 AAATTTCTGGGTCATTTTTTGCAAAATTTTAACCGAAATCATGTACTAACCATCACGGTTTTTTG
196 AAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTTG
* * * * * *
1255 CAAAAAACGCGTTCCGAGGACCCGACTCTGTTTTGCATGATTTTTTTGCGCCGACACTCCTTGAA
261 CCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGA-TTTTTTGCGCCGAGACTCCTTGAA
*
1320 ATTTCTAT
325 ATTTCTGT
* * ** * * *
1328 ATTCATCTTACCAAATATCATCCGTAATAGATTTAAGGATACATCTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
** **
1393 GTTTCGATTTAATCAGAAATTAATTTTA-AAAAATAAGAAAAATTGTATTTGAAGCGTGAAAAAC
66 GTTTCGATTTAATCAGAAATTAA-TTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAAC
* * * **
1457 CCGTCAATCTTTATTGTATTGAATTATATATTTCTTAGGAGTATTGGAACAAAGAATTGAGG-AA
130 CCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAA
* ** * *
1521 AAAATTTCTGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAAGTATCATGTTTTTTT
195 AAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACG-GTTTTT
* * * *
1586 TGCCAAAAACGCGTTCCGAGGCCCCGGGTCTGTTTTGCATGATTTTTTGCGCTGAGACTCCTTGA
259 TGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGA
*
1651 AATTTCTAT
324 AATTTCTGT
* * *
1660 ATTCATCTTACCAAATCTCATCCACAATAGATTTAAGGATATGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
*
1725 GTTTCGATTTAATCTGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
* * * *
1790 CTTCAAACTTTTTGGTATTGAATTATATA-TTCGTTATGAGTATTGGGGGAAACAATTGAGGAAA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGGAAA
* *
1854 AAAATTT-AGGGTCATTTTTTGCGAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
195 AAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
* * * * * *
1918 GCCAAAAAGGCGTTCCGGGGCCCCGGCTCTG-CTTACATGATTTCTTGCGCCGAGACACCTTGAA
260 GCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
*
1982 ATTTCTAT
325 ATTTCTGT
* * * * * * *
1990 ATTTATCTTACCAAATATCATCCGCAATAGATTTAAGGATACATCTTTACGAGGATCTG-AAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* *
2054 TTTTCCGATTTAATCAGAAATTAATTTTA-AAAAATAGGAAAAACGGTATTTGAAGCGTGAAAAA
66 GTTT-CGATTTAATCAGAAATTAA-TTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAA
*
2118 CCCTTCAATCTTTTTTGTATTCAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAA
129 CCCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAA
* * *
2183 AAAAATTTCCGGGACATTTTTTGCGAAATTTTAACCGAAATCGTGTACTAACCATCACAGTTTTT
194 AAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * * *
2248 TACCAAAAAGGCGTACCGGGGCCCCGGCTCAGTTTTGCATTA-TTTTTGAGCCAAGACTCCTTGA
259 TGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGA
*
2312 AATTTTTGT
324 AATTTCTGT
* *
2321 ATTCATCTTTCAAAATCTCATCCACAATGGATTTAAGGATATGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* * * *
2386 GTTTCGATTTAATCAGCAATTAATTTAGAAAAATTGGAAAAACAGTATTTGATGCGTGAAAAATC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
** *
2451 CTTCAA-AATTTTGGTATTGAATTATATA-TTCGTTATGAGTATTGGGGCAAAGAATTGAGG-AA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGGAAA
* *
2513 AAAATTTCTGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCATGGTTTTTT
195 AAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
* *
2578 GCCAAAAACGCGTTCCGGGGCCCCGGCTCTGTTTTGCATGATTTTTTGCGCCGAGATTCCTTGAA
260 GCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
2643 ATTTCTGT
325 ATTTCTGT
** * * * *
2651 ATTCATCTTTCCAAATCTCATTAAGAATGGATTTAAGGAGATGTTTTTACGAGGATCTTAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
** *
2716 GTTTCGATTTAATCAGAAATTAATTTAGAAACTTTGGAAAAACGGTATTTGAAGCGTTAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
* * * * *
2781 CTTCAAACTTTTTGGTATTGAATTATATA-TTCGTTATGAGTATTGGGGGATACAATTGAGGAAA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGG-AA
** **
2845 AAAAATTT---GGTCATTTTTTGTGAAATTTTAACCGAAATCGTGTACTAACCAT-AGCAATTTT
194 AAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCA-CGGTTTT
* * * * *
2906 TTGCCAAAAAGGCGTTCCGGGACCCCGGCTCAGTTTTGCATGATATTTTGAGCCGAGACTCCATG
258 TTGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTG
2971 AAATTTCTGT
323 AAATTTCTGT
2981 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
*
3046 ATTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
* * * *
3111 CTTCAAAC-TTTTTGCTATTGAATTATATA-TTCGTTATGAGTATTGGGGGAAACAGTTGAGGAA
131 CTTCAATCTTTTTTG-TATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGGAA
* * * * * *
3174 AAAAATTT---GGTCATTTTATGCGAAATTTAAACCGAAATCGCGTACTATCCATCACAGTTTTT
194 AAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTT
* **
3236 TGCCAAAAAGGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGATCCGAGACTCCTTGA
259 TGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGA
3301 AATTTCTGT
324 AATTTCTGT
3310 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* * *
3375 GTTTCAATTTAATCAGAAATTAATTTTA-AAAAATAGGAAAAACGGTTTTTGAAGCGTGAAAAAC
66 GTTTCGATTTAATCAGAAATTAA-TTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAAC
* *
3439 CCTTTAATCTTTTTTGTATTCAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAA
130 CCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAA
* * **
3504 TAAATTTCCGTGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCATAGTTTTTT
195 AAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
*
3569 GCCAAAAAGGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
260 GCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
*
3634 ATTTCTTT
325 ATTTCTGT
3642 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* * * * *
3707 GTTTCAATTTAATCAAAAATTAATTTAGAATAATTCGAAAAACGATATTT-ATAGCGTGAAGAAA
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGA-AGCGTGAA-AAA
* * * * *
3771 -CCTTCAAACTTTTTGGTATTGAATTAGATA-TTCGTTATGAGTATTGGGGGAAACAATTGAGGA
129 CCCTTCAATCTTTTTTGTATTGAATTATATATTTC-TTATGAGTATTGGGGCAAAGAATTGAGGA
* * * * *
3834 GAAAAATTT-TGGGTCATTTTTCGCGAAATTTTAACCGAAATCGTGTACTAACCATCACAGTTTT
193 AAAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTT
* * * ** *
3898 TTGCCAAAAAGGCGTTCCGGGGACCCGACTCAGTTTTTTATGATTTTTTGAGCCGAGACTCCTTG
258 TTGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTG
3963 AAATTTCTGT
323 AAATTTCTGT
* *
3973 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGGTACGTTTTCACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
4038 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
* *
4103 CTTCAATATTTTTTGTATTGAATTATATATTTCTTTTGAGTATTGGGGCAAAGAATTGAGGAAAA
131 CTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGG-AAA
* * *
4168 AAAATCTCCGGGTCATTTTTTGCAAAATTTTAACCGAACTCGTGTACTAACCATCACTGTTTTTT
195 AAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTT
* *
4233 GCCAAAAACGCGTTCCGGGGCCACGGCTCAGTTTTGCATGATTTTTTGCGCCGAAACTCCTTGAA
260 GCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAA
4298 ATTTCTGT
325 ATTTCTGT
4306 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
4371 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
66 GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
* * * *
4436 CTTCAATCTTTTTGGTATTGAGTTATATA-TTCTTATGAGTATTGGGCCAAAGAATTGAGGAAAG
131 CTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAAA
* * *
4500 AAATTTCCGGGTCATTTTTTTCAAAATTTTAACCGAAATCATGTACTAACCATCACGGTTTTTTA
196 AAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTTG
* * * *
4565 CTAAAAACGCGTTCCGGGGCCCCGACTCAGTTTTGCATTATTTTTTGCGCC-ATGACTCCTTTAA
261 CCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGA-GACTCCTTGAA
*
4629 ATTTCTAT
325 ATTTCTGT
* * * * * *
4637 ATTCATCGTACCAAATCTCATCCGCAATGGACTTAAGGATACATTTTTACGAAGATCTGAAAATT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
* *
4702 GTTTCGATTTAATCAGAAATTAATTTTTAAAAAAATAGGAAAAACGGTATTTGAAGCGTGAAAAA
66 GTTTCGATTTAATCAGAAATTAA--TTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAA
* * * * *
4767 CCCTTCAATCTTTTTTGTATTGAGTTATATATTTCCTATGAGTATTGGGGCAAAGAATTAACGAT
129 CCCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAA
**
4832 AAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTTGCCATCACGGTTTTT
194 AAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * * *
4897 TGCTAAAAACGCGTTCCGGGACCCCGACTTAGTTTTGCATGATTTTTTGCGCC-ATGACTACTTT
259 TGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGA-GACTCCTTG
*
4961 AAATTTCTAT
323 AAATTTCTGT
* * ** * * **
4971 ATTCATCGTACCAAATCTCATCTGCAATGGATTTAAGGATACATTTTTACGAAGATCTGAAACCT
1 ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
*
5036 GTTTCGATTTAATCAGAAATTAATTTTAAAAAAAATAT-GAAAAACGGTATTTTGAAGCGTGAAA
66 GTTTCGATTTAATCAGAAATTAA-TTT-AGAAAAAT-TGGAAAAACGGTA-TTTGAAGCGTGAAA
*
5100 AACCCTTCAATCTTTTTTCTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGG
127 AACCCTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGG
* * *
5165 AAAAAAATTTCCGGGTTATTTTTTGCAAAATTTTAACCGAAATCGTGTACTTACCATCTCGGTTT
192 AAAAAAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTT
* * * * *
5230 TTTGCTAAAAACGCGTTCCGGGACCCCGACTTAGTTTTGCATGATTTTTTGCGCC-ATGACTACT
257 TTTGCCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGA-GACTCCT
* *
5294 TTAAATTTCTAT
321 TGAAATTTCTGT
* * * * * * *
5306 ATTTAT-TCTACCAAATCTCATCCGCAATGGATTTAAGGATACATTTTTACAAAGATCTAAAAAT
1 ATTCATCT-TTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAAT
* * *
5370 TGTTTCGATTTTATCAGAAATTAATTTTAAAAAAATAGGAAAAACGGTATTTGAAGCGTGAAAA
65 TGTTTCGATTTAATCAGAAATTAA-TTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAA
5434 CAAAGAAGAT
Statistics
Matches: 4644, Mismatches: 399, Indels: 111
0.90 0.08 0.02
Matches are distributed among these distances:
328 4 0.00
329 587 0.13
330 1061 0.23
331 960 0.21
332 868 0.19
333 507 0.11
334 363 0.08
335 294 0.06
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (332 bp):
ATTCATCTTTCCAAATCTCATCCACAATGGATTTAAGGATACGTTTTTACGAGGATCTGAAAATT
GTTTCGATTTAATCAGAAATTAATTTAGAAAAATTGGAAAAACGGTATTTGAAGCGTGAAAAACC
CTTCAATCTTTTTTGTATTGAATTATATATTTCTTATGAGTATTGGGGCAAAGAATTGAGGAAAA
AAATTTCCGGGTCATTTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTTG
CCAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTCCTTGAAA
TTTCTGT
Done.