Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005049.1 Corchorus capsularis cultivar CVL-1 contig05067, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13098
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33


Found at i:1707 original size:88 final size:89

Alignment explanation


    Indices: 1542--1710  Score: 209
    Period size: 88  Copynumber: 1.9  Consensus size: 89

       1532 GAATGATTTT

                          *                 **     **    *                   
       1542 TTTTTAATTTGGAGTTAAATTTAGTGAAATATGGTTTTTTCTTGTTCTAAACCCTAAAATAATAA
          1 TTTTTAATTTGGAGCTAAATTTAGTGAAATATCATTTTTAATTGTCCTAAACCCTAAAATAATAA

              *                     
       1607 ATTTTTAATTTCACAAGTCACAAC
         66 ATATTTAATTTCACAAGTCACAAC

                                                                     **      
       1631 TTTTTAATTT-GAGACTAAATTTAGTGAAAT-TCATTTTTAATT-TCCTAAAACCCTGTAATAAT
          1 TTTTTAATTTGGAG-CTAAATTTAGTGAAATATCATTTTTAATTGTCCT-AAACCCTAAAATAAT

                     *        
       1693 AAATATTTAGTTTCACAA
         64 AAATATTTAATTTCACAA

       1711 CTTACCCTTT


Statistics
Matches: 68,  Mismatches: 10, Indels: 5
        0.82            0.12        0.06

Matches are distributed among these distances:
  87    3  0.04
  88   40  0.59
  89   25  0.37

ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44


Consensus pattern (89 bp):   
TTTTTAATTTGGAGCTAAATTTAGTGAAATATCATTTTTAATTGTCCTAAACCCTAAAATAATAA
ATATTTAATTTCACAAGTCACAAC
Done.