Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005051.1 Corchorus capsularis cultivar CVL-1 contig05069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23733

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2101--2140
12
3.2
12
89
6
62
35
12
22
30
1.91
2304--2329
13
2.0
13
100
0
52
23
0
0
76
0.78
3581--3608
10
2.8
10
100
0
56
28
7
21
42
1.79
3717--3755
12
3.6
12
74
25
50
33
15
25
25
1.95
12396--12453
29
2.0
30
93
3
100
36
15
10
37
1.82
12400--12461
29
2.1
28
82
11
72
38
19
8
33
1.81
12466--12497
16
2.0
16
100
0
64
37
12
18
31
1.88
20687--20877
31
6.5
31
75
10
94
15
24
24
35
1.94
20752--20876
62
2.0
62
82
3
153
13
25
24
36
1.92
21146--21186
7
6.0
7
82
5
57
14
2
0
82
0.76
22723--22754
2
16.5
2
93
6
57
50
0
0
50
1.00

Tables:   1

The End!