Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005064.1 Corchorus capsularis cultivar CVL-1 contig05082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7756
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:3733 original size:23 final size:23

Alignment explanation


    Indices: 3707--3753  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3697 GCAGTAGCAT

                  *                
       3707 AATCATGAAGAATACTAGACAAA
          1 AATCATCAAGAATACTAGACAAA

                                   
       3730 AATCATCAAGAATACTAGACAAA
          1 AATCATCAAGAATACTAGACAAA

             
       3753 A
          1 A

       3754 TAAGAAGGAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.57, C:0.15, G:0.11, T:0.17


Consensus pattern (23 bp):   
AATCATCAAGAATACTAGACAAA

Found at i:5900 original size:16 final size:16

Alignment explanation


    Indices: 5879--5913  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       5869 CTAATTAAAA

                            
       5879 TAATTAATTATTTTAG
          1 TAATTAATTATTTTAG

                            
       5895 TAATTAATTATTTTAG
          1 TAATTAATTATTTTAG

               
       5911 TAA
          1 TAA

       5914 AAAAAAGATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54


Consensus pattern (16 bp):   
TAATTAATTATTTTAG
Done.