Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005067.1 Corchorus capsularis cultivar CVL-1 contig05085, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12513
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:145 original size:2 final size:2

Alignment explanation


    Indices: 138--165  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        128 TGAATTATCC

                                                     
        138 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        166 TATTCATCAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:6449 original size:16 final size:16

Alignment explanation


    Indices: 6418--6472  Score: 60
    Period size: 16  Copynumber: 3.4  Consensus size: 16

       6408 CTCAAATGTC

                      *     
       6418 GGGTCA-TTTGGGTTT
          1 GGGTCATTTTTGGTTT

                            
       6433 GGGTCATTTTTGGTTT
          1 GGGTCATTTTTGGTTT

                 *            
       6449 GGGT-GTTTTTCGGTTTT
          1 GGGTCATTTTT-GG-TTT

                   
       6466 GGGTCAT
          1 GGGTCAT

       6473 ATGGTTCCAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 5
        0.80            0.07        0.12

Matches are distributed among these distances:
  15   11  0.33
  16   14  0.42
  17    7  0.21
  18    1  0.03

ACGTcount: A:0.05, C:0.07, G:0.36, T:0.51


Consensus pattern (16 bp):   
GGGTCATTTTTGGTTT
Done.