Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005072.1 Corchorus capsularis cultivar CVL-1 contig05090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25090

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1052--1105
16
3.4
16
81
0
54
37
33
7
22
1.82
1077--1121
16
2.8
16
86
6
56
35
22
15
26
1.94
5676--5792
60
2.0
60
82
3
146
35
12
15
35
1.86
8780--8827
25
1.9
25
95
0
87
39
0
16
43
1.48
9067--9096
2
15.0
2
92
0
51
46
3
0
50
1.18
22881--22910
2
15.0
2
100
0
60
50
0
0
50
1.00
22910--22946
2
18.5
2
100
0
74
0
0
48
51
1.00
24458--24496
15
2.8
13
82
14
51
79
2
12
5
1.00

Tables:   1

The End!