Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005075.1 Corchorus capsularis cultivar CVL-1 contig05093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5146
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33


Found at i:2055 original size:21 final size:21

Alignment explanation


    Indices: 2030--2069  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       2020 TTTATCCTCT

                                  
       2030 TCCATTGTTGC-GAGTTTGTTC
          1 TCCATT-TTGCTGAGTTTGTTC

                         *     
       2051 TCCATTTTGCTGATTTTGT
          1 TCCATTTTGCTGAGTTTGT

       2070 CTAAAAGTGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21   13  0.76

ACGTcount: A:0.10, C:0.17, G:0.20, T:0.53


Consensus pattern (21 bp):   
TCCATTTTGCTGAGTTTGTTC
Done.