Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000508.1 Corchorus capsularis cultivar CVL-1 contig00508, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:205 original size:6 final size:6

Alignment explanation


    Indices: 194--222  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

        184 AAGCATTAAA

                                             
        194 AAACAT AAACAT AAACAT AAACAT AAACA
          1 AAACAT AAACAT AAACAT AAACAT AAACA

        223 AGTCCTTGGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.69, C:0.17, G:0.00, T:0.14


Consensus pattern (6 bp):   
AAACAT

Done.