Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005081.1 Corchorus capsularis cultivar CVL-1 contig05099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18528

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1855--1887
16
2.0
17
88
5
50
69
0
3
27
1.03
2846--2946
23
4.5
23
83
2
109
38
11
8
40
1.73
2529--3120
22
27.1
22
68
14
174
36
14
9
40
1.78
3216--3409
22
8.7
22
70
15
91
34
14
11
39
1.83
3264--3363
44
2.3
44
80
3
112
35
16
11
38
1.83
3279--3443
22
7.5
22
74
12
119
33
16
10
39
1.83
3463--3782
22
14.8
22
66
16
91
36
18
9
35
1.83
3463--3566
44
2.4
44
79
7
113
35
18
10
35
1.85
3609--3720
46
2.5
44
81
11
113
38
19
8
33
1.83
3654--3751
42
2.3
43
83
11
121
35
18
11
34
1.86
3683--3782
42
2.3
44
81
11
118
38
16
10
36
1.82
3602--3783
22
8.3
22
72
13
133
39
19
8
32
1.82
5151--5252
38
2.7
37
83
4
141
53
11
19
14
1.71
5368--5434
31
2.2
32
86
5
93
49
4
13
32
1.62
10584--10708
62
2.0
62
95
0
223
54
8
14
22
1.67
13969--14007
21
1.9
21
94
5
71
20
15
5
58
1.55
14417--14479
32
2.0
32
87
0
90
50
23
7
17
1.72
18378--18479
31
3.3
31
78
0
96
18
20
25
35
1.95

Tables:   1

The End!