Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005082.1 Corchorus capsularis cultivar CVL-1 contig05100, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6402
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:6207 original size:3 final size:3

Alignment explanation


    Indices: 6193--6247  Score: 101
    Period size: 3  Copynumber: 18.3  Consensus size: 3

       6183 ATTTCCACAC

                  *                                                        
       6193 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG

                     
       6241 AAG AAG A
          1 AAG AAG A

       6248 TCTTTATGAT


Statistics
Matches: 50,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   50  1.00

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (3 bp):   
AAG

Done.