Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005090.1 Corchorus capsularis cultivar CVL-1 contig05108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6802
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:2345 original size:25 final size:25

Alignment explanation


    Indices: 2303--2354  Score: 77
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       2293 ATGTAATCTC

                                     
       2303 TCATAGAAAGACACCTTTTCATGTT
          1 TCATAGAAAGACACCTTTTCATGTT

                *    *   *           
       2328 TCATGGAAATACATCTTTTCATGTT
          1 TCATAGAAAGACACCTTTTCATGTT

              
       2353 TC
          1 TC

       2355 TGCAGATTTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40


Consensus pattern (25 bp):   
TCATAGAAAGACACCTTTTCATGTT

Found at i:6631 original size:25 final size:25

Alignment explanation


    Indices: 6593--6644  Score: 86
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       6583 ATGCAATCTC

                                     
       6593 TCATAGAAAGACACCTTTTCATGTT
          1 TCATAGAAAGACACCTTTTCATGTT

                *    *               
       6618 TCATGGAAATACACCTTTTCATGTT
          1 TCATAGAAAGACACCTTTTCATGTT

              
       6643 TC
          1 TC

       6645 TGCAGATTTT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38


Consensus pattern (25 bp):   
TCATAGAAAGACACCTTTTCATGTT
Done.