Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005093.1 Corchorus capsularis cultivar CVL-1 contig05111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9918

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1512--1627
36
3.2
36
82
2
142
29
19
9
41
1.83
1609--1677
32
2.2
32
94
0
120
30
21
10
37
1.87
1652--1848
37
5.3
37
94
1
333
24
24
8
42
1.81
1852--1998
36
4.1
36
90
5
210
20
16
14
48
1.80
1972--2022
25
2.0
25
100
0
102
23
7
19
49
1.74
2037--2312
41
6.9
41
87
2
373
22
19
10
47
1.80
2037--2290
119
2.1
122
89
2
388
23
18
11
46
1.81
2273--2358
36
2.4
35
85
12
113
25
18
11
44
1.84
2800--3114
137
2.3
140
90
5
491
36
10
9
44
1.71
3064--3367
139
2.2
140
86
3
418
36
8
9
45
1.68
4691--4717
4
6.8
4
100
0
54
74
0
0
25
0.83
5561--5591
12
2.6
12
89
0
53
6
58
12
22
1.58
7030--7082
2
28.0
2
85
11
76
50
1
0
47
1.12
7351--7409
30
2.0
30
86
0
82
44
18
3
33
1.67
8665--8707
21
2.0
21
90
0
68
55
4
0
39
1.20

Tables:   1

The End!