Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005094.1 Corchorus capsularis cultivar CVL-1 contig05112, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19650
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:4203 original size:12 final size:10

Alignment explanation


    Indices: 4171--4197  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

       4161 CTTTTTCATA

                      
       4171 AAAAAAAAAG
          1 AAAAAAAAAG

                      
       4181 AAAAAAAAAG
          1 AAAAAAAAAG

                   
       4191 AAAAAAA
          1 AAAAAAA

       4198 GTAAGACAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (10 bp):   
AAAAAAAAAG
Done.