Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000051.1 Corchorus capsularis cultivar CVL-1 contig00051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1135
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26


Found at i:945 original size:15 final size:15

Alignment explanation


    Indices: 909--938  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        899 TTATGAAATC

                           
        909 GAAGAAGAAGCTTTG
          1 GAAGAAGAAGCTTTG

                      *    
        924 GAAGAAGAAGTTTTG
          1 GAAGAAGAAGCTTTG

        939 AAGGAAGCTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.40, C:0.03, G:0.33, T:0.23


Consensus pattern (15 bp):   
GAAGAAGAAGCTTTG
Done.