Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000510.1 Corchorus capsularis cultivar CVL-1 contig00510, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1247
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:541 original size:2 final size:2

Alignment explanation


    Indices: 534--573  Score: 57
    Period size: 2  Copynumber: 20.5  Consensus size: 2

        524 ATTACTAGTG

                                                                          
        534 TA TA TA TA -A T- TA CTA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA T

        574 TCTTAAAAAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 6
        0.85            0.00        0.15

Matches are distributed among these distances:
   1    2  0.06
   2   31  0.89
   3    2  0.06

ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.