Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005102.1 Corchorus capsularis cultivar CVL-1 contig05120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10038

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
952--1460
35
14.5
35
89
2
738
39
9
16
34
1.81
987--1297
8
35.6
9
63
23
73
39
10
15
34
1.81
4246--4271
9
2.9
9
100
0
52
19
0
0
80
0.71
4336--4597
47
5.6
47
83
3
305
35
17
25
20
1.95
4336--4597
93
2.8
93
84
2
337
35
17
25
20
1.95
4717--4938
70
3.2
70
81
3
259
30
18
24
26
1.98
5466--5564
50
2.0
50
87
0
144
36
16
15
32
1.89
5850--5937
9
9.6
9
83
9
79
1
25
0
73
0.90
5858--5918
3
20.7
3
89
3
97
0
27
0
72
0.85
5839--5932
6
15.3
6
84
8
82
2
22
0
75
0.91
5900--5944
23
2.0
23
82
8
56
4
17
0
77
0.92
6250--6278
12
2.3
13
94
5
51
13
27
0
58
1.36
6277--6316
15
2.6
16
84
11
57
2
17
0
80
0.83
6282--6316
5
6.8
5
87
6
52
2
17
0
80
0.84
6651--6793
45
3.2
45
92
2
243
37
17
7
37
1.79
7394--7561
75
2.2
75
86
0
228
27
20
11
40
1.87
7537--7578
16
2.5
17
84
11
59
33
16
14
35
1.89
9272--9303
16
2.0
16
93
0
55
34
31
15
18
1.93
9902--9976
30
2.5
31
82
6
91
29
26
16
28
1.96

Tables:   1

The End!