Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005115.1 Corchorus capsularis cultivar CVL-1 contig05133, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7314
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33


Found at i:501 original size:2 final size:2

Alignment explanation


    Indices: 494--525  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        484 CTCTAATAAT

                                                           
        494 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        526 CACAACAAAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:6510 original size:17 final size:17

Alignment explanation


    Indices: 6471--6512  Score: 54
    Period size: 15  Copynumber: 2.6  Consensus size: 17

       6461 GATCAACTAG

                             
       6471 AATTTATATATATATAT
          1 AATTTATATATATATAT

                              
       6488 AA--TATACT-TATATAT
          1 AATTTATA-TATATATAT

                      
       6503 AATTTATATA
          1 AATTTATATA

       6513 GAATTCTGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 8
        0.72            0.00        0.28

Matches are distributed among these distances:
  15   13  0.62
  16    2  0.10
  17    6  0.29

ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50


Consensus pattern (17 bp):   
AATTTATATATATATAT
Done.