Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005117.1 Corchorus capsularis cultivar CVL-1 contig05135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7743

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
798--1001
35
5.9
35
91
0
329
39
11
17
31
1.85
2082--2265
22
8.3
22
75
9
140
33
9
17
39
1.83
2082--2211
66
2.0
66
81
6
156
36
10
14
37
1.81
2301--2679
22
17.7
21
69
14
127
38
9
17
34
1.83
2511--2700
44
4.3
44
74
5
145
41
8
15
33
1.79
2882--3012
31
4.2
31
78
3
120
32
24
24
18
1.97
3338--3461
44
2.8
44
75
12
121
41
8
18
31
1.79
3483--3557
23
3.3
23
81
3
89
37
9
16
37
1.80
3461--3546
23
3.7
23
78
4
84
40
8
13
37
1.75
3459--3587
22
5.8
21
73
15
64
37
10
14
36
1.82
3530--3598
22
3.1
22
70
12
52
34
13
14
37
1.85
3636--3701
22
3.0
22
75
4
60
30
13
16
39
1.87
3726--3764
19
2.1
19
90
0
60
51
5
10
33
1.58
3928--3999
36
2.0
36
100
0
144
41
5
16
36
1.72
4083--4128
2
23.0
2
84
8
58
43
0
4
52
1.21
5398--5475
31
2.5
31
85
2
111
8
16
35
38
1.80
5400--5475
16
4.8
16
72
15
77
9
17
36
36
1.81

Tables:   1

The End!