Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005128.1 Corchorus capsularis cultivar CVL-1 contig05146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4689
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:760 original size:16 final size:17

Alignment explanation


    Indices: 734--768  Score: 63
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        724 TATATGATGA

                             
        734 ATTTCTAGTAAACAAAG
          1 ATTTCTAGTAAACAAAG

                             
        751 ATTT-TAGTAAACAAAG
          1 ATTTCTAGTAAACAAAG

              
        767 AT
          1 AT

        769 AAGAAGTTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  16   14  0.78
  17    4  0.22

ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31


Consensus pattern (17 bp):   
ATTTCTAGTAAACAAAG
Done.