Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01005129.1 Corchorus capsularis cultivar CVL-1 contig05147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2189
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Found at i:653 original size:35 final size:35
Alignment explanation
Indices: 597--1237 Score: 529
Period size: 35 Copynumber: 18.3 Consensus size: 35
587 AACTCCTCTG
* * * * **
597 GATCAACTCTGATCATCGGAAATTTCTTTAAATGA
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * * *
632 GATCAACTCTAATTGTTGGAAACTACTGAAAACGT
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
*
667 GATCAACTCTGATCGTTGGAAACTACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* *
702 GATCAACTCTGATCGTTGGAAAATACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * *
737 GATCAACTCCGATCATTGGAAACTACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * *
772 GATCAACTCTGATC-ATGGAAAATACTGAAAATGT
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * *
806 GATCAACTCTGATCGTTGCAAAATACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* *
841 GATCAACTCTGATCGTTGGAAACTATTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* *
876 GATCAACTCTGATCGTTGGAAACTTCTGAAAATGT
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * *
911 GATTAACTCTGATCGTTGGAAAATACTGAAAATGC
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * *
946 GATCAACACTGATCGTTGGAAAATACTGAAAACGA
1 GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
* * *
981 GATCAACTCTGA-CCTCTGAAAACTTCTTG-AAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
* * *
1016 GATCAACTCTGA-CCTCTGAAAACTTCTTG-AAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
* * * *
1051 GATCAACTCTGA-CCTCTGAAAACTGCTTG-GAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
* * * *
1086 GATCAACTCTGA-CCTCTGAAAACTTCTTG-GAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
* * * *
1121 GATCAACTCTGA-CCTCTGAAAACTTCTTG-GAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
* * * *
1156 GATCAACTCTGA-CCTCTGAAAACTGCTTG-GAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
* * * *
1191 GATCAACTCTGA-CCTCTGAAAACTTCTTG-GAATGA
1 GATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGA
1226 GATCAACTCTGA
1 GATCAACTCTGA
1238 CCTCTGAAAA
Statistics
Matches: 553, Mismatches: 50, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
34 33 0.06
35 518 0.94
36 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (35 bp):
GATCAACTCTGATCGTTGGAAACTACTGAAAATGA
Found at i:1014 original size:70 final size:71
Alignment explanation
Indices: 597--1462 Score: 555
Period size: 70 Copynumber: 12.2 Consensus size: 71
587 AACTCCTCTG
* * * * ** ** * * *
597 GATCAACTCTGATCATCGGAAATTTCTTTAAATGAGATCAACTCT-AATTGTTGGAAACTAC-TG
1 GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGACCT-CTGAAAACTTCTTG
* *
660 AAAACGT
65 AAAATGA
* * * * *
667 GATCAACTCTGATCGTTGGAAACTACTGAAAATGCGATCAACTCTGATCGT-TGGAAAA-TAC-T
1 GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGA-CCTCT-GAAAACTTCTT
*
729 GAAAATGC
64 GAAAATGA
* * * * *
737 GATCAACTCCGATCATTGGAAACTACTGAAAATGCGATCAACTCTGA--TCATGGAAAA-TAC-T
1 GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGACCTC-T-GAAAACTTCTT
*
798 GAAAATGT
64 GAAAATGA
* * * * * *
806 GATCAACTCTGATCGTTGCAAAATACTGAAAATGCGATCAACTCTGATCGT-TGGAAAC-TATTG
1 GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGA-CCTCTGAAAACTTCTTG
*
869 AAAATGC
65 AAAATGA
* * * * * * *
876 GATCAACTCTGATCGTTGGAAACTTCTGAAAATGTGATTAACTCTGATCGT-TGGAAAA-TAC-T
1 GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGA-CCTCT-GAAAACTTCTT
*
938 GAAAATGC
64 GAAAATGA
* * *
946 GATCAACACTGATCGTTGGAAAATACTGAAAACGAGATCAACTCTGACCTCTGAAAACTTCTTG-
1 GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGA
1010 AAATGA
66 AAATGA
* *
1016 GATCAACTCTGA-CCTCT-GAAAACTTCTTG-AAATGAGATCAACTCTGACCTCTGAAAACTGCT
1 GATCAACTCTGATCCT-TGGAAAA-TAC-TGAAAATGAGATCAACTCTGACCTCTGAAAACTTCT
*
1078 TG-GAATGA
63 TGAAAATGA
* *
1086 GATCAACTCTGA-CCTCT-GAAAACTTCTTG-GAATGAGATCAACTCTGACCTCTGAAAACTTCT
1 GATCAACTCTGATCCT-TGGAAAA-TAC-TGAAAATGAGATCAACTCTGACCTCTGAAAACTTCT
*
1148 TG-GAATGA
63 TGAAAATGA
* *
1156 GATCAACTCTGA-CCTCT-GAAAACTGCTTG-GAATGAGATCAACTCTGACCTCTGAAAACTTCT
1 GATCAACTCTGATCCT-TGGAAAA-TAC-TGAAAATGAGATCAACTCTGACCTCTGAAAACTTCT
*
1218 TG-GAATGA
63 TGAAAATGA
* * *
1226 GATCAACTCTGA-CCTCT-GAAAACTTCTTG-GAATGAGATCAACTTTGACCTCTGAAAACTTGA
1 GATCAACTCTGATCCT-TGGAAAA-TAC-TGAAAATGAGATCAACTCTGACCTCTGAAAAC-T--
*
1288 TCTCTAAAAACTTCTTGAAATGA
60 TCT-T---GA-------AAATGA
* *
1311 GATCAACTCTGA-CCTCT-GAAAACTTCTTG-GAATGAGATCAACTCTGACCTCTGAAAACTTCT
1 GATCAACTCTGATCCT-TGGAAAA-TAC-TGAAAATGAGATCAACTCTGACCTCTGAAAACTTCT
*
1373 TG-GAATGA
63 TGAAAATGA
* * *
1381 GATCAACTCTGA-CCTCTGGAAACTTCTTG-AAATGAGATCAACTCTGACCTCTGCAAACTTCTT
1 GATCAACTCTGATCCT-TGGAAAATAC-TGAAAATGAGATCAACTCTGACCTCTGAAAACTTCTT
1444 G-AAATGA
64 GAAAATGA
*
1451 GATCATCTCTGA
1 GATCAACTCTGA
1463 CCTCTGATGA
Statistics
Matches: 701, Mismatches: 61, Indels: 68
0.84 0.07 0.08
Matches are distributed among these distances:
67 1 0.00
69 79 0.11
70 530 0.76
71 18 0.03
72 2 0.00
73 3 0.00
74 1 0.00
81 1 0.00
82 3 0.00
84 1 0.00
85 62 0.09
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (71 bp):
GATCAACTCTGATCCTTGGAAAATACTGAAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGA
AAATGA
Found at i:1049 original size:105 final size:106
Alignment explanation
Indices: 597--1469 Score: 576
Period size: 105 Copynumber: 8.2 Consensus size: 106
587 AACTCCTCTG
* * * * * * *
597 GATCAACTCTGATCATC-GGAAATTTCTTTAAATGAGATCAACTCTAATTGT-TGGAAACTAC-T
1 GATCAACTCTGA-CCTCTGAAAACTTCTTGAAATGAGATCAACTCTGATCGTCTGGAAAATACTT
* * * * * *
659 GAAAACGTGATCAACTCTGATCGT-TGGAAACTAC-TGAAAATGC
65 G-AAATGAGATCAACTCTGA-CCTCTGAAAACTTCTTG-AAATGA
* * * * * *
702 GATCAACTCTGATCGT-TGGAAAA-TAC-TGAAAATGCGATCAACTCCGATCAT-TGGAAACTAC
1 GATCAACTCTGA-CCTCT-GAAAACTTCTTG-AAATGAGATCAACTCTGATCGTCTGGAAAATAC
* * *
763 -TGAAAATGCGATCAACTCTGA--TCATGGAAAA-TAC-TGAAAATGT
63 TTG-AAATGAGATCAACTCTGACCTC-T-GAAAACTTCTTG-AAATGA
* * * *
806 GATCAACTCTGATCGT-TGCAAAA-TAC-TGAAAATGCGATCAACTCTGATCGT-TGGAAACTA-
1 GATCAACTCTGA-CCTCTG-AAAACTTCTTG-AAATGAGATCAACTCTGATCGTCTGGAAAATAC
* * * *
866 TTGAAAATGCGATCAACTCTGATCGT-TGGAAACTTC-TGAAAATGT
63 TTG-AAATGAGATCAACTCTGA-CCTCTGAAAACTTCTTG-AAATGA
* * * * *
911 GATTAACTCTGATCGT-TGGAAAA-TAC-TGAAAATGCGATCAACACTGATCGT-TGGAAAATAC
1 GATCAACTCTGA-CCTCT-GAAAACTTCTTG-AAATGAGATCAACTCTGATCGTCTGGAAAATAC
*
972 -TGAAAACGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGA
63 TTG-AAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGA
* *
1016 GATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGA-CCTCT-GAAAACTGCTT
1 GATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGATCGTCTGGAAAA-TACTT
* *
1079 GGAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGA
65 GAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGA
* * *
1121 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGA-CCTCT-GAAAACTGCTT
1 GATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGATCGTCTGGAAAA-TACTT
* *
1184 GGAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGA
65 GAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGA
* * *
1226 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTTTGA-CCTCT-GAAAACTTGAT
1 GATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGATCGTCTGGAAAA--T-A-
* * * * * *
1289 CTCTAAAAACTTCTTGAAATGAGA-TC--AACTCTGACCTCTGAAAACTTCTTGGAATGA
62 CT-T-GAAA-----TGAGATCA-ACTCTGACCTCTGA-----AAA--CTTCTTGAAATGA
* * * *
1346 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGA-CCTCTGGAAACTTCTTG
1 GATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGATCGTCTGGAAAATACTTG
*
1410 AAATGAGATCAACTCTGACCTCTGCAAACTTCTTGAAATGA
66 AAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGA
*
1451 GATCATCTCTGACCTCTGA
1 GATCAACTCTGACCTCTGA
1470 TGACTACACT
Statistics
Matches: 668, Mismatches: 56, Indels: 88
0.82 0.07 0.11
Matches are distributed among these distances:
102 1 0.00
103 1 0.00
104 110 0.16
105 428 0.64
106 12 0.02
107 3 0.00
108 2 0.00
109 2 0.00
110 10 0.01
112 6 0.01
113 7 0.01
115 11 0.02
116 2 0.00
117 2 0.00
118 2 0.00
119 1 0.00
120 64 0.10
121 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (106 bp):
GATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGATCGTCTGGAAAATACTTG
AAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGA
Found at i:1238 original size:35 final size:35
Alignment explanation
Indices: 979--1285 Score: 569
Period size: 35 Copynumber: 8.8 Consensus size: 35
969 TACTGAAAAC
*
979 GAGATCAACTCTGACCTCTGAAAACTTCTTGAAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
*
1014 GAGATCAACTCTGACCTCTGAAAACTTCTTGAAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
*
1049 GAGATCAACTCTGACCTCTGAAAACTGCTTGGAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1084 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1119 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
*
1154 GAGATCAACTCTGACCTCTGAAAACTGCTTGGAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1189 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1224 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
1 GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
*
1259 GAGATCAACTTTGACCTCTGAAAACTT
1 GAGATCAACTCTGACCTCTGAAAACTT
1286 GATCTCTAAA
Statistics
Matches: 266, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 266 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (35 bp):
GAGATCAACTCTGACCTCTGAAAACTTCTTGGAAT
Found at i:1333 original size:190 final size:191
Alignment explanation
Indices: 1090--1469 Score: 663
Period size: 190 Copynumber: 2.0 Consensus size: 191
1080 GAATGAGATC
* *
1090 AACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
1 AACTCTGACCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
1155 AGATCAACTCTGACCTCTGAAAACTGCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTG
66 AGATCAACTCTGACCTCTGAAAACTGCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTG
* * *
1220 GAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTTTGACCTCTGAA
131 AAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAA
*
1281 AACT-TGATCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
1 AACTCTGACCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
* *
1345 AGATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGGAAACTTCTTG
66 AGATCAACTCTGACCTCTGAAAACTGCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTG
* *
1410 AAATGAGATCAACTCTGACCTCTGCAAACTTCTTGAAATGAGATCATCTCTGACCTCTGA
131 AAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGA
1470 TGACTACACT
Statistics
Matches: 179, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
190 175 0.98
191 4 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (191 bp):
AACTCTGACCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
AGATCAACTCTGACCTCTGAAAACTGCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTG
AAATGAGATCAACTCTGACCTCTGAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAA
Found at i:1340 original size:155 final size:155
Alignment explanation
Indices: 1125--1440 Score: 551
Period size: 155 Copynumber: 2.0 Consensus size: 155
1115 GAATGAGATC
* *
1125 AACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAAAACTGCTTGGAATG
1 AACT-TGACCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTGCTTGGAATG
1190 AGATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTG
65 AGATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTG
* *
1255 GAATGAGATCAACTTTGACCTCTGAA
130 AAATGAGATCAACTCTGACCTCTGAA
* *
1281 AACTTGATCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGA
1 AACTTGACCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTGCTTGGAATGA
*
1346 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGGAAACTTCTTGA
66 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTGA
*
1411 AATGAGATCAACTCTGACCTCTGCA
131 AATGAGATCAACTCTGACCTCTGAA
1436 AACTT
1 AACTT
1441 CTTGAAATGA
Statistics
Matches: 152, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
155 148 0.97
156 4 0.03
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (155 bp):
AACTTGACCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTGCTTGGAATGA
GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTGA
AATGAGATCAACTCTGACCTCTGAA
Found at i:1345 original size:35 final size:35
Alignment explanation
Indices: 1281--1469 Score: 308
Period size: 35 Copynumber: 5.4 Consensus size: 35
1271 GACCTCTGAA
* *
1281 AACT-TGATCTCTAAAAACTTCTTGAAATGAGATC
1 AACTCTGACCTCTGAAAACTTCTTGAAATGAGATC
*
1315 AACTCTGACCTCTGAAAACTTCTTGGAATGAGATC
1 AACTCTGACCTCTGAAAACTTCTTGAAATGAGATC
*
1350 AACTCTGACCTCTGAAAACTTCTTGGAATGAGATC
1 AACTCTGACCTCTGAAAACTTCTTGAAATGAGATC
*
1385 AACTCTGACCTCTGGAAACTTCTTGAAATGAGATC
1 AACTCTGACCTCTGAAAACTTCTTGAAATGAGATC
*
1420 AACTCTGACCTCTGCAAACTTCTTGAAATGAGATC
1 AACTCTGACCTCTGAAAACTTCTTGAAATGAGATC
*
1455 ATCTCTGACCTCTGA
1 AACTCTGACCTCTGA
1470 TGACTACACT
Statistics
Matches: 146, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
34 4 0.03
35 142 0.97
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (35 bp):
AACTCTGACCTCTGAAAACTTCTTGAAATGAGATC
Found at i:1404 original size:120 final size:120
Alignment explanation
Indices: 1160--1405 Score: 429
Period size: 120 Copynumber: 2.0 Consensus size: 120
1150 GAATGAGATC
* *
1160 AACTCTGACCTCTGAAAACTGCTTGGAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
1 AACT-TGACCTCTAAAAACTGCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATG
*
1225 AGATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTTTGACCTCTGAA
65 AGATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAA
* *
1281 AACTTGATCTCTAAAAACTTCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGA
1 AACTTGACCTCTAAAAACTGCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGA
*
1346 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGGA
66 GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAA
1401 AACTT
1 AACTT
1406 CTTGAAATGA
Statistics
Matches: 119, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
120 115 0.97
121 4 0.03
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (120 bp):
AACTTGACCTCTAAAAACTGCTTGAAATGAGATCAACTCTGACCTCTGAAAACTTCTTGGAATGA
GATCAACTCTGACCTCTGAAAACTTCTTGGAATGAGATCAACTCTGACCTCTGAA
Done.