Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000513.1 Corchorus capsularis cultivar CVL-1 contig00513, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1482
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38


Found at i:132 original size:79 final size:78

Alignment explanation


    Indices: 1--150  Score: 246
    Period size: 79  Copynumber: 1.9  Consensus size: 78

                                                                             
          1 AAAAACTCTATTTTTATATAATTAAAGCTAATATCCTTATAACTAAAATATTTTAACCATTTTAC
          1 AAAAACTCTATTTTTATATAATTAAAGCTAATATCCTTATAACTAAAATATTTT-ACCATTTTAC

                          
         66 TATTTTACTCAACT
         65 TATTTTACTCAACT

                                      *  *  *            **                  
         80 AAAAACTCTATTTTTATATAATTAAATCTGATTTCCTTATAACTATTATATTTTACCATTTTACT
          1 AAAAACTCTATTTTTATATAATTAAAGCTAATATCCTTATAACTAAAATATTTTACCATTTTACT

                  
        145 ATTTTA
         66 ATTTTA

        151 ATTAAAAAAC


Statistics
Matches: 66,  Mismatches: 5, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  78   17  0.26
  79   49  0.74

ACGTcount: A:0.38, C:0.14, G:0.01, T:0.47


Consensus pattern (78 bp):   
AAAAACTCTATTTTTATATAATTAAAGCTAATATCCTTATAACTAAAATATTTTACCATTTTACT
ATTTTACTCAACT
Done.