Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005133.1 Corchorus capsularis cultivar CVL-1 contig05151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7925

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--511
70
7.4
69
88
1
673
28
18
27
25
1.98
1022--1103
41
2.0
41
88
4
121
34
18
14
32
1.91
1386--1450
10
6.4
10
80
13
71
1
18
0
80
0.80
1385--1447
19
3.7
17
76
21
69
1
17
0
80
0.78
1386--1443
14
4.2
14
75
16
59
1
17
0
81
0.78
2042--2096
28
1.9
29
85
10
78
1
16
1
80
0.90
2633--2771
44
3.1
44
93
1
242
35
20
7
35
1.82
2777--2849
17
4.4
16
77
16
69
2
20
0
76
0.90
2777--2851
23
3.3
22
74
20
66
2
21
0
76
0.92
2780--2862
12
6.9
11
78
16
67
3
20
0
75
0.94
3240--3461
75
3.0
75
89
0
338
29
21
10
39
1.86
3602--3669
3
22.7
3
96
0
91
25
0
7
67
1.16

Tables:   1

The End!