Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005135.1 Corchorus capsularis cultivar CVL-1 contig05153, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4201
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38


Found at i:2654 original size:23 final size:23

Alignment explanation


    Indices: 2628--2671  Score: 70
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       2618 CTCTCTTAAT

                                   
       2628 TGACTAAATAGAAGAAAAAAGTA
          1 TGACTAAATAGAAGAAAAAAGTA

                     *    *      
       2651 TGACTAAATTGAAGCAAAAAG
          1 TGACTAAATAGAAGAAAAAAG

       2672 GTAGAAAGAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.57, C:0.07, G:0.18, T:0.18


Consensus pattern (23 bp):   
TGACTAAATAGAAGAAAAAAGTA

Found at i:3616 original size:3 final size:3

Alignment explanation


    Indices: 3608--3658  Score: 102
    Period size: 3  Copynumber: 17.0  Consensus size: 3

       3598 ACCATAACAT

                                                                           
       3608 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

               
       3656 ATA
          1 ATA

       3659 GCAAAGATTT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   48  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Done.