Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005136.1 Corchorus capsularis cultivar CVL-1 contig05154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6010
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:1415 original size:12 final size:12

Alignment explanation


    Indices: 1398--1427  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       1388 ATACACGTTT

                        
       1398 ACACGACACGAA
          1 ACACGACACGAA

                        
       1410 ACACGACACGAA
          1 ACACGACACGAA

                  
       1422 ACACGA
          1 ACACGA

       1428 ATTGCCAGGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.50, C:0.33, G:0.17, T:0.00


Consensus pattern (12 bp):   
ACACGACACGAA
Done.