Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005146.1 Corchorus capsularis cultivar CVL-1 contig05164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1625
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:1269 original size:33 final size:33

Alignment explanation


    Indices: 1192--1298  Score: 135
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       1182 AGCACTTGTG

                       *               *     
       1192 ACCGGCCACGCAACTTGGAGATGCCCGACCATC
          1 ACCGGCCACGCGACTTGGAGATGCCCGGCCATC

              *                 *            
       1225 ACTGGCCACGCGACTTGGAGTTGCCCGGCCATC
          1 ACCGGCCACGCGACTTGGAGATGCCCGGCCATC

                          **   *             
       1258 ACCGGCCACGCGACAAGGACATGCCCGGCCA-C
          1 ACCGGCCACGCGACTTGGAGATGCCCGGCCATC

                     
       1290 AACCGGCCA
          1 -ACCGGCCA

       1299 AATGACTCAG


Statistics
Matches: 64,  Mismatches: 9, Indels: 2
        0.85            0.12        0.03

Matches are distributed among these distances:
  32    1  0.02
  33   63  0.98

ACGTcount: A:0.22, C:0.40, G:0.27, T:0.10


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGATGCCCGGCCATC
Done.