Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005153.1 Corchorus capsularis cultivar CVL-1 contig05171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5314
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Found at i:1499 original size:31 final size:31

Alignment explanation


    Indices: 1461--1523  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1451 CTGAACTAAT

                                           
       1461 TCAAACATCCAAGATCTAAAGATCTGGAGAC
          1 TCAAACATCCAAGATCTAAAGATCTGGAGAC

                                           
       1492 TCAAACATCCAAGATCTAAAGATCTGGAGAC
          1 TCAAACATCCAAGATCTAAAGATCTGGAGAC

             
       1523 T
          1 T

       1524 GATAACCCAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21


Consensus pattern (31 bp):   
TCAAACATCCAAGATCTAAAGATCTGGAGAC
Done.