Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005155.1 Corchorus capsularis cultivar CVL-1 contig05173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3823
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29


Found at i:3751 original size:30 final size:29

Alignment explanation


    Indices: 3705--3780  Score: 107
    Period size: 29  Copynumber: 2.6  Consensus size: 29

       3695 CGTGTGAAAG

                                          
       3705 GGGGCAAAACGTCCAAAATTGAGAGTTCAT
          1 GGGGCAAAACGTCCAAAATTGA-AGTTCAT

                *    *                   
       3735 GGGGTAAAATGTCCAAAATTGAAGTTCAT
          1 GGGGCAAAACGTCCAAAATTGAAGTTCAT

            *  *             
       3764 TGGACAAAACGTCCAAA
          1 GGGGCAAAACGTCCAAA

       3781 CACTACAAGT


Statistics
Matches: 40,  Mismatches: 6, Indels: 1
        0.85            0.13        0.02

Matches are distributed among these distances:
  29   20  0.50
  30   20  0.50

ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21


Consensus pattern (29 bp):   
GGGGCAAAACGTCCAAAATTGAAGTTCAT

Done.