Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005156.1 Corchorus capsularis cultivar CVL-1 contig05174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2282
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:1023 original size:10 final size:10

Alignment explanation


    Indices: 1008--1033  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        998 AATTTTAATG

                      
       1008 TTTAATATTA
          1 TTTAATATTA

                      
       1018 TTTAATATTA
          1 TTTAATATTA

                  
       1028 TTTAAT
          1 TTTAAT

       1034 GGAAAATTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (10 bp):   
TTTAATATTA

Found at i:1591 original size:10 final size:11

Alignment explanation


    Indices: 1576--1604  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       1566 AATTACTTTG

                       
       1576 ATCAATTA-AA
          1 ATCAATTACAA

                       
       1586 ATCAATTACAA
          1 ATCAATTACAA

                    
       1597 ATCAATTA
          1 ATCAATTA

       1605 TTACAAATTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10    8  0.44
  11   10  0.56

ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31


Consensus pattern (11 bp):   
ATCAATTACAA
Done.