Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005157.1 Corchorus capsularis cultivar CVL-1 contig05175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:2062 original size:32 final size:32

Alignment explanation


    Indices: 2024--2087  Score: 128
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       2014 AGATTACTAG

                                            
       2024 ATAAGGACTGATTTTTGGATGAGAACTTAATA
          1 ATAAGGACTGATTTTTGGATGAGAACTTAATA

                                            
       2056 ATAAGGACTGATTTTTGGATGAGAACTTAATA
          1 ATAAGGACTGATTTTTGGATGAGAACTTAATA

       2088 CTGCATCGTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34


Consensus pattern (32 bp):   
ATAAGGACTGATTTTTGGATGAGAACTTAATA
Done.