Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005163.1 Corchorus capsularis cultivar CVL-1 contig05181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4428
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37


Found at i:3434 original size:31 final size:30

Alignment explanation


    Indices: 3396--3503  Score: 96
    Period size: 31  Copynumber: 3.6  Consensus size: 30

       3386 TAATTTGGAC

                                           
       3396 AGGCCCTTATTTGAGCATTTTCGACAACGTT
          1 AGGCCCTTATTTGAGCATTTT-GACAACGTT

                              **       * * 
       3427 AGGCCCTTATTTG-GCCAAATT-A-AAAGAT
          1 AGGCCCTTATTTGAG-CATTTTGACAACGTT

            *                      *        
       3455 CGGACCCTTATTTGAGCATTTTGGCAAACGTT
          1 AGG-CCCTTATTTGAGCATTTTGAC-AACGTT

                *            
       3487 AGGCGCTTATTTGAGCA
          1 AGGCCCTTATTTGAGCA

       3504 ATTAGCCTAA


Statistics
Matches: 59,  Mismatches: 12, Indels: 12
        0.71            0.14        0.14

Matches are distributed among these distances:
  28    6  0.10
  29   15  0.25
  30    2  0.03
  31   30  0.51
  32    6  0.10

ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32


Consensus pattern (30 bp):   
AGGCCCTTATTTGAGCATTTTGACAACGTT
Done.