Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005164.1 Corchorus capsularis cultivar CVL-1 contig05182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1792
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44


Found at i:1338 original size:18 final size:18

Alignment explanation


    Indices: 1315--1350  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1305 AAAAATGTTT

                   * *        
       1315 TTTTGAAGATTTTTTGGA
          1 TTTTGAAAAATTTTTGGA

                              
       1333 TTTTGAAAAATTTTTGGA
          1 TTTTGAAAAATTTTTGGA

       1351 ATTTCATAAG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.28, C:0.00, G:0.19, T:0.53


Consensus pattern (18 bp):   
TTTTGAAAAATTTTTGGA
Done.