Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005167.1 Corchorus capsularis cultivar CVL-1 contig05185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2902
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


Found at i:1732 original size:24 final size:24

Alignment explanation


    Indices: 1687--1733  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 24

       1677 AATCATTCTT

                            *       
       1687 AAAAATTCAAAGCAATCATCAATC
          1 AAAAATTCAAAGCAATAATCAATC

                       *            
       1711 AAAAA-TCAAATCAATAACTCAAT
          1 AAAAATTCAAAGCAATAA-TCAAT

       1734 ATATGCATAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  23   10  0.50
  24   10  0.50

ACGTcount: A:0.57, C:0.19, G:0.02, T:0.21


Consensus pattern (24 bp):   
AAAAATTCAAAGCAATAATCAATC
Done.