Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005169.1 Corchorus capsularis cultivar CVL-1 contig05187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3028
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33


Found at i:1765 original size:55 final size:55

Alignment explanation


    Indices: 1495--1767  Score: 465
    Period size: 55  Copynumber: 5.0  Consensus size: 55

       1485 CTTATTACCC

                          *  *                              * *    
       1495 TAACTCTGATTAATTTCCTTTTACTTAATTACTGGTTTACTGATTACTGTCACTT
          1 TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT

             *                                                     
       1550 TGACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT
          1 TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT

                                              *             * *    
       1605 TAACTCTGATTAATCTCTTTTTACTTAATTACTGATTTACTGATTACTGTCACTT
          1 TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT

                                                                   
       1660 TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT
          1 TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT

                                              *                  
       1715 TAACTCTGATTAATCTCTTTTTACTTAATTACTGATTTACTGATTACTATTAC
          1 TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTAC

       1768 CTTGATTTCC


Statistics
Matches: 205,  Mismatches: 13, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  55  205  1.00

ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50


Consensus pattern (55 bp):   
TAACTCTGATTAATCTCTTTTTACTTAATTACTGGTTTACTGATTACTATTACTT
Done.