Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005172.1 Corchorus capsularis cultivar CVL-1 contig05190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2005
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35


Found at i:799 original size:78 final size:78

Alignment explanation


    Indices: 670--826  Score: 314
    Period size: 78  Copynumber: 2.0  Consensus size: 78

        660 CAAGGTATAG

                                                                             
        670 AAAAAGAACCTAAACTATTGCATTTATGATGTAATTTTCTTTGATAAGCAGCAGATATATTTTCA
          1 AAAAAGAACCTAAACTATTGCATTTATGATGTAATTTTCTTTGATAAGCAGCAGATATATTTTCA

                         
        735 TCCATGTAAGCAT
         66 TCCATGTAAGCAT

                                                                             
        748 AAAAAGAACCTAAACTATTGCATTTATGATGTAATTTTCTTTGATAAGCAGCAGATATATTTTCA
          1 AAAAAGAACCTAAACTATTGCATTTATGATGTAATTTTCTTTGATAAGCAGCAGATATATTTTCA

                         
        813 TCCATGTAAGCAT
         66 TCCATGTAAGCAT

             
        826 A
          1 A

        827 TTTTTCACCG


Statistics
Matches: 79,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  78   79  1.00

ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36


Consensus pattern (78 bp):   
AAAAAGAACCTAAACTATTGCATTTATGATGTAATTTTCTTTGATAAGCAGCAGATATATTTTCA
TCCATGTAAGCAT

Done.